Hi Curt,
Your question is not clear. Please let us know if my answer is about something else.
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Define.xml file should provide all details about all variables and important value level metadata in study data. Some metadata is required or conditionally required by Define-XML standard and FDA/PMDA. Please see Define-XML standard documentation for details. FDA/PMDA requirements are implemented as validation rules in Pinnacle 21 Validator.
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I am not sure what “check boxes” you refer to.
Kind Regards,
Sergiy