Hi John,
Please refer to the below: Section 6.1.2 “Use of Controlled Terminologies” of FDA study data TCG latest version (Mar 2024)
Sponsors should use the most recent version of the dictionary available at the start of a clinical or nonclinical study.
If a new version becomes available after the start of the study, sponsors may use the most current version of the dictionary for that clinical or nonclinical study.
Also, as you mentioned, you can describe related validation warning (CT2002).
However, if the study is intended to be an integrated analysis, the old version may be used for the consistency of the product.
Best regards,
MinJi