R and PsN installation in Pirana

[kashyellepeddi]

Hello,

I am new to Pirana and having some issues with adding R and perl speaks nonmem to Pirana. My NONMEM program is running okay and I was able to perform simulations from datafile. However, when I am trying to run R scripts it is giving me the message below. Any help to rectify this issue is appreciated.

Sincerely,

Kash

[kniefort]

Hi Kash,

It looks like the paths to your R install are not configured correctly. Under settings, software integration you need to browse to the paths associated with R and Rstudio. The fields will turn green with successful paths. The screenshot below provides an example for a typical windows installation.

Best Regards,

Keith

[cradhakr]

Hi Kash,

Could you please check if Pirana is configured for R. The best place to check is

File >> Settings >> Software integration and make sure it pointed to the right location (image below)

[kashyellepeddi]

@kniefort

Hi Kash,

It looks like the paths to your R install are not configured correctly. Under settings, software integration you need to browse to the paths associated with R and Rstudio. The fields will turn green with successful paths. The screenshot below provides an example for a typical windows installation.

Best Regards,

Keith

Hi Keith,

Thanks for your help. I configured the path to R correctly as you suggested. However, when I am trying to run scripts to generate goodness of fit plots I am getting an error that “The table file sdtab1 was not found. Please check your output tables.” When i open the sdtab1 in nmfe output folder i can see the data though. Not sure if I am doing anything wrong.

Sincerely,

Kash

[cradhakr]

@kashyellepeddi

Hi Kash,

It looks like the paths to your R install are not configured correctly. Under settings, software integration you need to browse to the paths associated with R and Rstudio. The fields will turn green with successful paths. The screenshot below provides an example for a typical windows installation.

Best Regards,

Keith

Hi Keith,

Thanks for your help. I configured the path to R correctly as you suggested. However, when I am trying to run scripts to generate goodness of fit plots I am getting an error that “The table file sdtab1 was not found. Please check your output tables.” When i open the sdtab1 in nmfe output folder i can see the data though. Not sure if I am doing anything wrong.

Sincerely,

Kash

Hi Kash,

Could you check if you have defined $Table correctly. If you still have issues with the scripts - could you please email to support@certara.com.

Thanks

Chandramouli

;----------------------------------
$TABLE ID TIME DV MDV EVID IPRED IWRES FILE=sdtab001
;----------------------------------
; Xpose
$TABLE ID CL ETA1 FIRSTONLY FILE=patab001
;----------------------------------